CCB Doks
CCB Doks
Main
Docs
News
Get Started
Connect to CCB
Linux command line
Data management
Slurm
Conda
Pipelines
News
Socials
GitHub
Twitter
Expand
Collapse
Connect to CCB
First steps
Introduction
Apply for an account
VPN setup
Microsoft Windows setup
First connection over SSH
Change your SSH password
Configure SSH
Benefits of configuring SSH
Set up an SSH key pair
Configure an SSH host
Advanced client configuration
Linux command line
Linux essentials
Introduction to Linux and Bash
Autocompletion
Keyboard shortcuts
Helpful commands
Wildcards
Files and directories
Navigate directories
Files and permissions
Viewing and editing files
Manage files and directories
Link to files and directories
File types and extensions
Working in Linux
Linux streams
The Linux pipe
Combine commands
Compress and decompress files
Filter and sort file contents
Searching for files
Loop over items and files
Linux processes
Introduction to Linux processes
Monitor processes
Resilience to loss of connection
Environment modules
Using environment modules
Configuration
The .bashrc file
Environment variables
Advanced configuration
Data management
Organisation and backup
Philosophy
Collaboration projects
Name files carefully
Back up your work
Compress large files
Delete intermediate files
Use symbolic links
Monitor your disk space quota
File transfers
Using FileZilla
Using the command line
Slurm
HPC resources
Slurm commands
Links to Slurm documentation
Conda
Introduction to Conda
Install Miniconda
First steps with Conda
Use Conda environments
Conda cheatsheet
Python
Setup
Using Python on the CCB cluster
Setup Python on macOS
Setup Python on Windows
R
Setup
Using R on the CCB cluster
Setup R on Windows
Install Bioconductor
Pipelines
The DRMAA API
The cgatcore library
Help
Contact
Links to external resources
Contributing
Links to Slurm documentation
Links to external resources about Slurm.
Slurm Documentation
Slurm Quick Start User Guide
WIMM CCB Computing Infrastructure
← Slurm commands
Introduction to Conda →